SMTL ID : 5efd.1 (1 other biounit)

Crystal structure of a surface pocket creating mutant (W6A) of an alkali thermostable GH10 xylanase from Bacillus sp. NG-27

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: N.293, R.352, D.355 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:R.352, A:D.355, H2O.1, H2O.2, H2O.7

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: S.19, D.303, L.306, S.307 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.19

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: F.5, A.6, A.7, R.34, K.37, V.38, Y.344 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.7 Water bridges: A:K.37, A:K.37, A:K.37 EDO.4: 6 residues within 4Å: Chain A: W.90, H.91, N.92, E.150, R.163, Y.198 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.92, A:E.150, A:R.163 Water bridges: A:H.91, A:N.92 EDO.5: 5 residues within 4Å: Chain A: A.76, R.77, M.81, L.83, D.141 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.141

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 1 residues within 4Å: Chain A: R.163 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bansia, H. et al., Small Glycols Discover Cryptic Pockets on Proteins for Fragment-Based Approaches. J.Chem.Inf.Model. (2021)

Release Date

2016-10-26

Peptides

Beta-xylanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-xylanase

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