SMTL ID : 5efq.2 (1 other biounit)

Crystal structure of human Cdk13/Cyclin K in complex with ADP-aluminum fluoride

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 21 residues within 4Å: Chain A: I.19, E.21, G.22, T.23, V.27, A.40, K.42, I.73, F.99, E.100, Y.101, M.102, D.105, S.149, N.150, L.152, D.163, H.326 Ligands: AF3.2, MG.3, MG.4 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:T.23, A:E.100, A:M.102, A:D.105, A:D.105 Water bridges: A:E.21, A:T.23, A:K.42, A:K.42, A:S.149, A:N.150, A:D.163 Salt bridges: A:K.42, A:K.42

1 x AF3: ALUMINUM FLUORIDE(Non-covalent)

AF3.2: 7 residues within 4Å: Chain A: D.145, K.147, N.150, D.163 Ligands: ADP.1, MG.3, MG.4 No protein-ligand interaction detected (PLIP)

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: N.150, D.163 Ligands: ADP.1, AF3.2, MG.4 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.163, H2O.1 MG.4: 5 residues within 4Å: Chain A: T.23, D.163 Ligands: ADP.1, AF3.2, MG.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.163, A:D.163, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Greifenberg, A.K. et al., Structural and Functional Analysis of the Cdk13/Cyclin K Complex. Cell Rep (2016)

Release Date

2015-12-30

Peptides

Cyclin-dependent kinase 13: A
Cyclin-K: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Cyclin-dependent kinase 13

Cyclin-K

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