SMTL ID : 6ckx.2 (1 other biounit)

Structure of CDK12/CycK in complex with a small molecule inhibitor N-(4-(1-methyl-1H-pyrazol-4-yl)phenyl)-N-((1r,4r)-4-(quinazolin-2-ylamino)cyclohexyl)acetamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: N.152, D.165 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.165

1 x 8M1: N-[4-(1-methyl-1H-pyrazol-4-yl)phenyl]-N-{trans-4-[(quinazolin-2-yl)amino]cyclohexyl}acetamide(Non-covalent)

8M1.2: 14 residues within 4Å: Chain A: I.20, I.21, G.22, E.23, A.42, V.75, F.101, E.102, Y.103, M.104, D.105, H.106, D.107, L.154 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.42, A:V.75, A:F.101, A:F.101, A:Y.103, A:L.154 Hydrogen bonds: A:M.104, A:M.104, A:D.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ito, M. et al., Discovery of 3-Benzyl-1-( trans-4-((5-cyanopyridin-2-yl)amino)cyclohexyl)-1-arylurea Derivatives as Novel and Selective Cyclin-Dependent Kinase 12 (CDK12) Inhibitors. J. Med. Chem. (2018)

Release Date

2018-08-29

Peptides

Cyclin-dependent kinase 12: A
Cyclin-K: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Cyclin-dependent kinase 12

Cyclin-K

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