SMTL ID : 5egm.1

Development of a novel tricyclic class of potent and selective FIXa inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 8 residues within 4Å: Chain A: E.55, H.56, N.57, I.58, E.60, T.61, E.62, E.65 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.57, A:E.65

1 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)

NHE.2: 7 residues within 4Å: Chain A: D.6, V.133, F.134, A.140, L.141, V.142, Q.144 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.134 Hydrogen bonds: A:L.141, A:V.142 Water bridges: A:D.6, A:Q.144

1 x 5NY: 2-chloranyl-~{N}-[(7~{S})-2-methyl-7-phenyl-10-(1~{H}-1,2,3,4-tetrazol-5-yl)-8,9-dihydro-6~{H}-pyrido[1,2-a]indol-7-yl]-4-(1,2,4-triazol-4-yl)benzamide(Non-covalent)

5NY.3: 20 residues within 4Å: Chain A: H.41, N.84, K.85, Y.86, H.135, K.136, F.162, S.180, C.181, Q.182, G.183, D.184, S.185, I.203, S.204, W.205, G.206, E.207, E.208, C.209 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.86, A:F.162, A:Q.182, A:Q.182, A:I.203, A:W.205 Hydrogen bonds: A:Q.182, A:G.206 Water bridges: A:N.84, A:N.84, A:G.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meng, D. et al., Development of a novel tricyclic class of potent and selective FIXa inhibitors. Bioorg.Med.Chem.Lett. (2015)

Release Date

2015-11-18

Peptides

Coagulation factor IX: A
Coagulation factor IX: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coagulation factor IX

Coagulation factor IX

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