SMTL ID : 5tno.1

Discovery of novel aminobenzisoxazole derivatives as orally available factor IXa inhibitors

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

hetero-1-1-mer

Ligands

1 x UNL: UNKNOWN LIGAND

UNL.1: 20 residues within 4Å: Chain A: N.84, Y.86, H.135, F.162, D.179, S.180, C.181, Q.182, S.185, I.203, S.204, W.205, G.206, E.207, E.208, C.209, A.210, Y.215, G.216, I.217 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.86, A:F.162, A:W.205 Hydrogen bonds: A:S.180, A:G.206, A:E.208 Water bridges: A:N.84, A:N.84, A:E.207, A:A.210, A:A.210

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 8 residues within 4Å: Chain A: E.55, H.56, N.57, I.58, E.60, T.61, E.62, E.65 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.57, A:E.62, A:E.65 Water bridges: A:E.55

2 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)

NHE.3: 7 residues within 4Å: Chain A: D.6, V.133, F.134, A.140, L.141, V.142, Q.144 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.134 Hydrogen bonds: A:L.141, A:V.142 NHE.4: 10 residues within 4Å: Chain A: V.22, D.23, A.24, F.25, I.58, G.131, R.132, S.139, Q.182, G.183 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.22, A:R.132, A:Q.182 Hydrogen bonds: A:D.23, A:D.23, A:A.24 Water bridges: A:S.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sakurada, I. et al., Discovery of novel aminobenzisoxazole derivatives as orally available factor IXa inhibitors. Bioorg. Med. Chem. Lett. (2017)

Release Date

2017-04-26

Peptides

Coagulation factor IX: A
Coagulation factor IX: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coagulation factor IX

Coagulation factor IX

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