SMTL ID : 5eiu.1 (2 other biounits)

Mini TRIM5 B-box 2 dimer C2 crystal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.20, E.22, D.23, H.37, H.40 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.20, A:D.23, A:H.37, A:H.40 ZN.2: 6 residues within 4Å: Chain A: C.9, R.11, H.12, C.28, L.30, C.31 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.9, A:H.12, A:C.28, A:C.31 ZN.3: 5 residues within 4Å: Chain B: C.20, E.22, D.23, H.37, H.40 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.20, B:D.23, B:H.37, B:H.40 ZN.4: 5 residues within 4Å: Chain B: C.9, H.12, C.28, L.30, C.31 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.9, B:H.12, B:C.28, B:C.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wagner, J.M. et al., Mechanism of B-box 2 domain-mediated higher-order assembly of the retroviral restriction factor TRIM5 alpha. Elife (2016)

Release Date

2016-06-15

Peptides

TRIM protein-E3 ligase Chimera: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

TRIM protein-E3 ligase Chimera

Related Entries With Identical Sequence