SMTL ID : 5iea.2 (1 other biounit)

TRIM5 B-box2 and coiled-coil chimera

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.26 Å

Oligo State

homo-trimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.20, E.22, D.23, H.37, H.40 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.20, A:D.23, A:H.37, A:H.40 ZN.2: 5 residues within 4Å: Chain A: C.9, H.12, C.28, L.30, C.31 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.9, A:H.12, A:C.28, A:C.31 ZN.3: 4 residues within 4Å: Chain B: C.20, D.23, H.37, H.40 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.20, B:D.23, B:H.37, B:H.40 ZN.4: 5 residues within 4Å: Chain B: C.9, H.12, C.28, L.30, C.31 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.9, B:H.12, B:C.28, B:C.31 ZN.5: 4 residues within 4Å: Chain C: C.20, D.23, H.37, H.40 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.20, C:D.23, C:H.37, C:H.40 ZN.6: 5 residues within 4Å: Chain C: C.9, H.12, C.28, L.30, C.31 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.9, C:H.12, C:C.28, C:C.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wagner, J.M. et al., Mechanism of B-box 2 domain-mediated higher-order assembly of the retroviral restriction factor TRIM5 alpha. Elife (2016)

Release Date

2016-06-15

Peptides

Tripartite motif-containing protein 5, Serine--tRNA ligase Chimera: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
F

C
K

Tripartite motif-containing protein 5, Serine--tRNA ligase Chimera

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