SMTL ID : 5eiy.1 (1 other biounit)

Bacterial cellulose synthase bound to a substrate analogue

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

monomer

Ligands

1 x BGC- BGC- BGC- BGC- BGC- BGC- BGC- BGC- BGC- BGC- BGC- BGC- BGC- BGC- BGC- BGC- GAL: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose

BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-GAL.1: 47 residues within 4Å: Chain A: Y.81, E.109, S.112, I.115, F.116, N.119, H.277, E.298, M.301, F.302, Y.303, I.306, C.319, T.342, D.344, W.384, M.388, N.413, S.414, F.417, W.418, R.424, F.427, A.430, P.431, Y.434, G.438, I.439, E.440, I.441, F.442, A.444, M.453, Y.456, L.457, R.472, S.477, E.478, E.481, G.548, D.549, V.552, V.555, V.556, W.559 Ligands: PLC.2, 660.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.298, A:W.418, A:Y.303, A:C.319, A:T.342

1 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)

PLC.2: 8 residues within 4Å: Chain A: F.436, G.438, S.534, A.538, R.542, F.546, D.549 Ligands: BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-GAL.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.436, A:A.538 Salt bridges: A:R.542, A:R.542, A:D.549 pi-Cation interactions: A:F.546

1 x 43Y: [(2R)-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-2-propanoyloxy-propyl] propanoate(Non-covalent)

43Y.3: 6 residues within 4Å: Chain A: A.55, K.58, L.462, G.709, L.710, L.711 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.710, A:L.711 Salt bridges: A:K.58

2 x C2E: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)(Non-covalent)

C2E.4: 16 residues within 4Å: Chain A: R.580, R.581, A.582, R.585, D.610, A.611, S.612, S.614, G.615, V.616, R.617, R.659, G.671, V.672, I.673 Ligands: C2E.5 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:R.580, A:R.581, A:A.582, A:R.585, A:S.612, A:S.612, A:S.614, A:S.614, A:R.617, A:V.672 Salt bridges: A:R.585, A:D.610 pi-Cation interactions: A:R.580, A:R.585 C2E.5: 9 residues within 4Å: Chain A: Q.578, Q.579, R.580, R.581, R.585, R.617, R.659, S.660 Ligands: C2E.4 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Q.579, A:Q.579, A:Q.579, A:R.580, A:R.580, A:R.581, A:R.585, A:R.585, A:R.617, A:R.617 Salt bridges: A:R.581, A:R.617 pi-Cation interactions: A:R.581

2 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)

LDA.6: 4 residues within 4Å: Chain A: W.543, L.554, G.558, W.559 No protein-ligand interaction detected (PLIP) LDA.7: 1 residues within 4Å: Chain A: W.719 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:W.719

1 x MG: MAGNESIUM ION(Non-covalent)

MG.8: 5 residues within 4Å: Chain A: D.249, H.250, L.369, K.509 Ligands: 660.9 No protein-ligand interaction detected (PLIP)

1 x 660: [[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-[[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]methyl]phosphinic acid(Non-covalent)

660.9: 26 residues within 4Å: Chain A: P.148, S.149, Y.150, E.152, D.181, A.226, K.227, N.230, D.247, A.248, H.250, H.277, C.319, G.320, S.321, D.344, Q.380, R.383, W.384, F.504, A.505, V.506, T.507, K.509 Ligands: BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-GAL.1, MG.8 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.504 Hydrogen bonds: A:Y.150, A:E.152, A:D.181, A:K.227, A:K.227, A:N.230, A:A.248, A:G.320, A:D.344, A:Q.380, A:R.383, A:T.507, A:T.507, A:T.507 Salt bridges: A:R.383, A:K.509

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morgan, J.L. et al., Observing cellulose biosynthesis and membrane translocation in crystallo. Nature (2016)

Release Date

2016-03-09

Peptides

Putative cellulose synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Putative cellulose synthase

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