- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x 3V9: N-(1,3-benzodioxol-5-ylmethyl)-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide(Non-covalent)
3V9.3: 20 residues within 4Å:- Chain A: G.9, E.70, F.71, T.99, G.100, T.101, S.102, R.113, G.116, I.117
- Chain B: V.156, I.159, L.171, T.172, A.173, E.202, T.206, Y.240
- Ligands: ADP.1, MG.2
19 PLIP interactions:9 interactions with chain A, 10 interactions with chain B- Hydrophobic interactions: A:F.71, B:V.156, B:L.171, B:E.202
- Hydrogen bonds: A:G.9, A:T.99, A:G.100, A:R.113, A:R.113, B:T.172, B:T.172, B:A.173
- Water bridges: A:N.96, A:N.96, A:G.98, B:R.149, B:Y.240, B:Y.240
- pi-Stacking: B:Y.240
3V9.8: 20 residues within 4Å:- Chain A: V.156, I.159, L.171, T.172, A.173, E.202, T.206, Y.240
- Chain B: G.9, E.70, F.71, T.99, G.100, T.101, S.102, R.113, G.116, I.117
- Ligands: ADP.6, MG.7
22 PLIP interactions:11 interactions with chain A, 11 interactions with chain B- Hydrophobic interactions: A:V.156, A:L.171, A:E.202, B:F.71
- Hydrogen bonds: A:T.172, A:T.172, A:T.172, A:A.173, B:G.9, B:T.99, B:G.100, B:R.113, B:R.113
- Water bridges: A:R.149, A:Y.240, A:Y.240, B:E.70, B:E.70, B:N.96, B:N.96, B:G.98
- pi-Stacking: A:Y.240
- 4 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
UNX.4: 5 residues within 4Å:- Chain A: R.149, D.153, N.175, A.195, V.199
No protein-ligand interaction detected (PLIP)UNX.5: 3 residues within 4Å:- Chain A: L.89, A.90, N.219
No protein-ligand interaction detected (PLIP)UNX.9: 5 residues within 4Å:- Chain B: R.149, D.153, N.175, A.195, V.199
No protein-ligand interaction detected (PLIP)UNX.10: 3 residues within 4Å:- Chain B: L.89, A.90, N.219
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hughes, S.J. et al., Discovery of Potent Pantothenamide Inhibitors of Staphylococcus aureus Pantothenate Kinase through a Minimal SAR Study: Inhibition Is Due to Trapping of the Product. Acs Infect Dis. (2016)
- Release Date
- 2016-08-10
- Peptides
- Type II pantothenate kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x 3V9: N-(1,3-benzodioxol-5-ylmethyl)-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide(Non-covalent)
- 4 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hughes, S.J. et al., Discovery of Potent Pantothenamide Inhibitors of Staphylococcus aureus Pantothenate Kinase through a Minimal SAR Study: Inhibition Is Due to Trapping of the Product. Acs Infect Dis. (2016)
- Release Date
- 2016-08-10
- Peptides
- Type II pantothenate kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A