SMTL ID : 5ema.1

Crystal structure of the SNX27 PDZ domain bound to the phosphorylated C-terminal LRRC3B PDZ binding motif

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

monomer

Ligands

1 x ASP- ASP- ILE- SEP- THR- VAL- VAL: ASP-ASP-ILE-SEP-THR-VAL-VAL(Non-covalent)

ASP-ASP-ILE-SEP-THR-VAL-VAL.1: 16 residues within 4Å: Chain A: G.18, Y.19, G.20, F.21, N.22, V.23, R.24, G.25, Q.26, V.27, S.48, H.80, V.84, I.87, R.88 Ligands: GOL.2 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.21, A:V.27 Hydrogen bonds: A:Y.19, A:G.20, A:F.21, A:F.21, A:V.23, A:V.23, A:R.24, A:R.24, A:G.25, A:G.25, A:S.48, A:S.48, A:H.80 Water bridges: A:R.24, A:V.27 Salt bridges: A:R.24

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: N.22, A.49 Ligands: ASP-ASP-ILE-SEP-THR-VAL-VAL.1, ASP-ASP-ILE-SEP-THR-VAL-VAL.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clairfeuille, T. et al., A molecular code for endosomal recycling of phosphorylated cargos by the SNX27-retromer complex. Nat.Struct.Mol.Biol. (2016)

Release Date

2016-09-07

Peptides

Sorting nexin-27: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sorting nexin-27

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