SMTL ID : 5epc.1 (1 other biounit)

Crystal structure of wild-type human phosphoglucomutase 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: S.140, D.311, D.313, D.315 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.140, A:D.311, A:D.313, A:D.315, H2O.3, H2O.7

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.526, S.528, G.529, R.538 Ligands: GOL.11 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.529 Salt bridges: A:R.526, A:R.538 SO4.3: 3 residues within 4Å: Chain A: E.377, K.493, R.514 5 PLIP interactions: 5 interactions with chain A Water bridges: A:E.377, A:R.514, A:R.514 Salt bridges: A:K.493, A:R.514 SO4.4: 5 residues within 4Å: Chain A: S.43, R.46, S.140, H.141, R.316 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.43, A:S.140 Water bridges: A:R.46, A:S.140, A:D.315, A:R.316 Salt bridges: A:R.46, A:H.141, A:R.316 SO4.5: 2 residues within 4Å: Chain A: R.108, I.129 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.108 SO4.6: 4 residues within 4Å: Chain A: R.240, R.244, P.267, N.269 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.269 Water bridges: A:R.240, A:R.240, A:R.244, A:R.244, A:N.269 Salt bridges: A:R.240, A:R.244

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 7 residues within 4Å: Chain A: R.87, F.88, Y.89, M.90, K.91, E.92, E.278 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.89, A:M.90, A:K.91, A:K.91, A:E.92, A:E.92, A:E.278, A:E.278 GOL.8: 6 residues within 4Å: Chain A: F.326, N.328, R.445, F.447, F.448, P.555 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.328, A:R.445, A:F.448, A:F.448 Water bridges: A:N.328, A:D.331, A:W.440, A:T.585 GOL.9: 6 residues within 4Å: Chain A: N.158, P.163, K.383, G.386, N.387, D.390 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.158, A:N.387, A:D.390 Water bridges: A:G.160, A:P.161 GOL.10: 2 residues within 4Å: Chain A: Q.556, I.584 No protein-ligand interaction detected (PLIP) GOL.11: 7 residues within 4Å: Chain A: T.380, E.400, S.401, R.450, R.538, Y.540 Ligands: SO4.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.400, A:R.526, A:Y.540 Water bridges: A:E.400, A:R.450

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stiers, K.M. et al., Induced Structural Disorder as a Molecular Mechanism for Enzyme Dysfunction in Phosphoglucomutase 1 Deficiency. J.Mol.Biol. (2016)

Release Date

2016-04-27

Peptides

Phosphoglucomutase-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoglucomutase-1

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