SMTL ID : 5epc.2 (1 other biounit)

Crystal structure of wild-type human phosphoglucomutase 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: S.140, D.311, D.313, D.315 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.140, A:D.311, A:D.313, A:D.315, H2O.6

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.526, S.528, R.538 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.528, A:S.528 Salt bridges: A:R.526, A:R.538 SO4.3: 2 residues within 4Å: Chain A: R.108, I.129 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.108 SO4.4: 4 residues within 4Å: Chain A: S.43, S.140, H.141, R.316 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.140 Water bridges: A:H.141, A:H.141 Salt bridges: A:H.141, A:R.316

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 8 residues within 4Å: Chain A: G.86, R.87, F.88, Y.89, M.90, K.91, E.92, E.278 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.86, A:Y.89, A:K.91, A:E.92 GOL.6: 8 residues within 4Å: Chain A: Q.113, N.114, I.116, D.213, S.214, V.215, P.254, K.258 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.113, A:N.114, A:S.214, A:S.214, A:K.258 Water bridges: A:D.213 GOL.7: 5 residues within 4Å: Chain A: F.326, N.328, R.445, F.447, F.448 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.328, A:D.331, A:D.331, A:R.445, A:F.448, A:F.448 Water bridges: A:N.328 GOL.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stiers, K.M. et al., Induced Structural Disorder as a Molecular Mechanism for Enzyme Dysfunction in Phosphoglucomutase 1 Deficiency. J.Mol.Biol. (2016)

Release Date

2016-04-27

Peptides

Phosphoglucomutase-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Phosphoglucomutase-1

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