SMTL ID : 5er8.2 (1 other biounit)

Crystal structure of cyclization domain of Phomopsis amygdali fusicoccadiene synthase complexed with manganese ions and neridronate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

5 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: D.111, D.115, K.258 Ligands: MN.2, NRD.4 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.111, A:D.115, H2O.1, H2O.1 MN.2: 4 residues within 4Å: Chain A: D.111, D.115 Ligands: MN.1, NRD.4 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.111, A:D.115, H2O.1, H2O.1, H2O.1 MN.3: 5 residues within 4Å: Chain A: R.207, N.251, S.255, E.259 Ligands: NRD.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.255, A:E.259, H2O.1 MN.6: 2 residues within 4Å: Chain A: Y.33 Ligands: CL.5 No protein-ligand interaction detected (PLIP) MN.7: 3 residues within 4Å: Chain A: H.231, E.232, S.316 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.316, H2O.1

1 x NRD: (6-azanyl-1-oxidanyl-1-phosphono-hexyl)phosphonic acid(Non-covalent)

NRD.4: 16 residues within 4Å: Chain A: F.108, D.111, D.115, R.207, D.210, V.211, W.244, N.251, S.255, K.258, E.259, R.344, Y.345 Ligands: MN.1, MN.2, MN.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.211 Hydrogen bonds: A:D.111, A:R.207, A:R.207, A:D.210, A:K.258, A:R.344, A:Y.345

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: Y.34, T.35, E.36 Ligands: MN.6 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, M. et al., Structure and Function of Fusicoccadiene Synthase, a Hexameric Bifunctional Diterpene Synthase. Acs Chem.Biol. (2016)

Release Date

2016-01-20

Peptides

Fusicoccadiene synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Fusicoccadiene synthase

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