SMTL ID : 5erm.1 (1 other biounit)

Crystal structure of cyclization domain of Phomopsis amygdali fusicoccadiene synthase complexed with magnesium ions and pamidronate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x 210: PAMIDRONATE(Non-covalent)

210.1: 15 residues within 4Å: Chain A: F.108, D.111, D.115, R.207, D.210, V.211, N.251, S.255, K.258, E.259, R.344, Y.345 Ligands: MG.3, MG.4, MG.5 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:D.111, A:R.207, A:R.207, A:D.210, A:V.211, A:N.251, A:S.255, A:K.258, A:R.344, A:Y.345 Water bridges: A:D.111, A:D.115, A:D.115, A:K.258

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: Y.34, T.35, E.36 Ligand excluded by PLIP

3 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: D.111, D.115 Ligands: 210.1, MG.4 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.111, A:D.115, A:D.115, H2O.1, H2O.2 MG.4: 6 residues within 4Å: Chain A: D.111, D.115, K.258, E.259 Ligands: 210.1, MG.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.111, A:D.115, H2O.1, H2O.1 MG.5: 5 residues within 4Å: Chain A: R.207, N.251, S.255, E.259 Ligands: 210.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.255, A:E.259, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, M. et al., Structure and Function of Fusicoccadiene Synthase, a Hexameric Bifunctional Diterpene Synthase. Acs Chem.Biol. (2016)

Release Date

2016-01-20

Peptides

Fusicoccadiene synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fusicoccadiene synthase

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