SMTL ID : 5euw.1

Rat prestin STAS domain in complex with nitrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 8 residues within 4Å: Chain A: P.39, I.40, Y.41, V.74, F.76, M.77, D.78, G.81 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.40, A:F.76, A:D.78, A:G.81

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: Q.9, Y.16, I.28, H.132, V.135, L.136 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.9 EDO.3: 2 residues within 4Å: Chain A: V.109 Ligands: PEG.6 No protein-ligand interaction detected (PLIP) EDO.4: 3 residues within 4Å: Chain A: Y.41, D.78, V.80 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.41

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.5: 11 residues within 4Å: Chain A: V.89, G.93, G.96, I.97, Y.98, A.122, L.123, E.125, L.126, E.142, A.143 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.125 Water bridges: A:V.99, A:E.125

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 6 residues within 4Å: Chain A: V.109, T.113, F.118, K.124, L.127 Ligands: EDO.3 No protein-ligand interaction detected (PLIP) PEG.7: 6 residues within 4Å: Chain A: P.2, S.3, N.37, A.38, P.39, Y.42 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lolli, G. et al., The STAS domain of mammalian SLC26A5 prestin harbours an anion-binding site. Biochem.J. (2016)

Release Date

2015-12-16

Peptides

Prestin,Prestin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prestin,Prestin

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