SMTL ID : 5ev4.1

Structure IV of Intact U2AF65 Recognizing the 3' Splice Site Signal

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

1 x U- U- U- DU- U- U- BRU- DU- C: DNA/RNA (5'-R(P*UP*UP*UP*(UD)P*UP*U)-D(P*(BRU)P*(UD))-R(P*C)-3')(Non-covalent)

U-U-U-DU-U-U-BRU-DU-C.1: 46 residues within 4Å: Chain A: R.6, Q.7, R.10, Y.12, N.15, K.55, N.56, F.57, F.59, K.85, R.87, R.88, P.89, H.90, D.91, T.112, V.113, V.114, D.116, K.120, F.122, G.124, G.125, N.128, N.149, V.151, K.152, D.153, S.154, T.156, L.158, K.160, G.161, Y.162, F.164, K.188, K.189, L.190, L.191, Q.193, R.194, A.195, V.197, G.198, A.199, K.200 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.88, A:H.90 Water bridges: A:R.87, A:H.90, A:H.90 pi-Stacking: A:Y.12, A:H.90

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: M.72, I.86, R.87, V.113 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Agrawal, A.A. et al., An extended U2AF(65)-RNA-binding domain recognizes the 3' splice site signal. Nat Commun (2016)

Release Date

2016-02-24

Peptides

Splicing factor U2AF 65 kDa subunit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Splicing factor U2AF 65 kDa subunit

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