SMTL ID : 5ex8.1

Structure of P450 StaF from glycopeptide antibiotic A47934 biosynthesis; ethylene glycol cryo

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 28 residues within 4Å: Chain A: L.118, T.119, H.126, R.130, F.137, F.261, A.266, Q.269, V.270, L.273, T.311, D.312, T.315, H.316, R.318, L.341, A.367, F.368, G.369, I.372, H.373, C.375, L.376, G.377, M.380, A.381 Ligands: EDO.2, EDO.7 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:F.137, A:F.261, A:A.266, A:V.270, A:L.273, A:D.312, A:L.341, A:F.368, A:L.376, A:A.381 Hydrogen bonds: A:H.316 Water bridges: A:H.316, A:H.373 Salt bridges: A:H.126, A:R.130, A:H.316, A:R.318, A:H.373 Metal complexes: A:C.375

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: F.261, A.265, A.266, Q.269 Ligands: HEM.1, EDO.7 Ligand excluded by PLIP EDO.3: 4 residues within 4Å: Chain A: G.369, H.370, G.371, H.374 Ligand excluded by PLIP EDO.4: 7 residues within 4Å: Chain A: R.51, W.279, E.283, L.401, P.404, R.406, I.408 Ligand excluded by PLIP EDO.5: 3 residues within 4Å: Chain A: D.195, I.199, Y.222 Ligand excluded by PLIP EDO.6: 3 residues within 4Å: Chain A: R.292, H.394, P.397 Ligand excluded by PLIP EDO.7: 7 residues within 4Å: Chain A: T.119, F.261, Q.269, D.312, H.316 Ligands: HEM.1, EDO.2 Ligand excluded by PLIP EDO.8: 7 residues within 4Å: Chain A: D.403, R.406, E.407, I.408, A.419, L.420, L.421 Ligand excluded by PLIP EDO.9: 6 residues within 4Å: Chain A: V.170, W.175, D.268, R.272, D.416, V.417 Ligand excluded by PLIP EDO.10: 5 residues within 4Å: Chain A: R.91, Q.92, G.95, S.96, H.370 Ligand excluded by PLIP EDO.11: 4 residues within 4Å: Chain A: Q.143, R.146, L.383, K.386 Ligand excluded by PLIP EDO.12: 5 residues within 4Å: Chain A: R.148, I.152, D.155, P.180, R.190 Ligand excluded by PLIP EDO.13: 2 residues within 4Å: Chain A: D.97, K.98 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain A: I.112, P.115, Y.121, E.254 Ligand excluded by PLIP EDO.15: 6 residues within 4Å: Chain A: W.114, P.115, M.220, A.253, T.256, G.257 Ligand excluded by PLIP EDO.16: 4 residues within 4Å: Chain A: G.164, G.165, D.423, W.424 Ligand excluded by PLIP EDO.17: 4 residues within 4Å: Chain A: R.198, I.199, A.202, K.218 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ulrich, V. et al., Biochemical and structural characterisation of the second oxidative crosslinking step during the biosynthesis of the glycopeptide antibiotic A47934. Beilstein J Org Chem (2016)

Release Date

2017-01-11

Peptides

Cytochrome P450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450

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