SMTL ID : 5ezx.1

CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH {(1R,2R)-2-[(R)-2-Amino-4-(4-difluoromethoxy-phenyl)-4,5-dihydro-oxazol-4-yl]-cyclopropyl}-(5-chloro-pyridin-3-yl)-methanone

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 5T5: [(1~{R},2~{R})-2-[(4~{S})-2-azanyl-4-[4-[bis(fluoranyl)methoxy]phenyl]-5~{H}-1,3-oxazol-4-yl]cyclopropyl]-(5-chloranylpyridin-3-yl)methanone(Non-covalent)

5T5.1: 20 residues within 4Å: Chain A: G.16, Q.17, G.18, L.35, D.37, G.39, S.40, V.74, Y.76, W.81, F.113, I.115, W.120, I.123, R.133, D.233, S.234, G.235, T.236, T.237 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.35, A:Y.76, A:F.113, A:I.123 Hydrogen bonds: A:D.37, A:T.236 Halogen bonds: A:S.234

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: H.186, Y.189 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.189 Water bridges: A:H.186 NA.4: 2 residues within 4Å: Chain A: V.146, T.149 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.146

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 4 residues within 4Å: Chain A: R.101, N.103, E.139, Q.148 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.103, A:S.144 Water bridges: A:N.103, A:N.103, A:N.103 Salt bridges: A:E.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuhn, B. et al., A Real-World Perspective on Molecular Design. J.Med.Chem. (2016)

Release Date

2016-02-24

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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