SMTL ID : 5f00.1

CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH 5-[3-[(3-chloro-8-quinolyl)amino]phenyl]-5-methyl-2,6-dihydro-1,4-oxazin-3-amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: H.186, Y.189 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.186 NA.2: 2 residues within 4Å: Chain A: V.146, T.149 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.146

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 6 residues within 4Å: Chain A: R.101, A.102, N.103, E.139, S.144, Q.148 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.103, A:S.144 Water bridges: A:N.103 Salt bridges: A:E.139

1 x 5T8: (5~{R})-5-[3-[(3-chloranylquinolin-8-yl)amino]phenyl]-5-methyl-2,6-dihydro-1,4-oxazin-3-amine(Non-covalent)

5T8.4: 16 residues within 4Å: Chain A: G.16, Q.17, G.18, L.35, D.37, G.39, Y.76, F.113, I.115, I.123, D.233, S.234, G.235, T.236, T.237, A.340 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.35, A:Y.76, A:F.113, A:I.115, A:I.123 Hydrogen bonds: A:D.233, A:G.235, A:T.236 Water bridges: A:D.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuhn, B. et al., A Real-World Perspective on Molecular Design. J.Med.Chem. (2016)

Release Date

2016-02-24

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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