SMTL ID : 5f0k.2 (4 other biounits)

Structure of VPS35 N terminal region

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.07 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: R.46, G.94, N.95, I.96 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.96 EDO.2: 4 residues within 4Å: Chain A: V.132, Q.133, H.134, R.137 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.133, A:H.134

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: L.35, K.36, S.39, L.89, V.90, Y.92, A.93, G.94 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.89 GOL.4: 5 residues within 4Å: Chain A: Y.87, Y.110, S.117, D.120, I.121 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.110 GOL.5: 2 residues within 4Å: Chain A: K.23, Y.68 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.23

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 6 residues within 4Å: Chain A: N.29, K.30, L.31, M.32, D.33, K.82 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.31, A:M.32 Salt bridges: A:K.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lucas, M. et al., Structural Mechanism for Cargo Recognition by the Retromer Complex. Cell (2016)

Release Date

2016-12-07

Peptides

Vacuolar protein sorting-associated protein 35: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Vacuolar protein sorting-associated protein 35

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