SMTL ID : 5f0k.4 (4 other biounits)

Structure of VPS35 N terminal region

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.07 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: R.46, N.95, I.96 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.46, A:N.95, A:I.96 EDO.2: 4 residues within 4Å: Chain A: G.43, E.44, R.46, T.47 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.46 EDO.3: 2 residues within 4Å: Chain A: Q.322, K.363 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.322, A:K.363

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: K.23, D.64, E.65, Y.68 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.23 GOL.5: 5 residues within 4Å: Chain A: Q.147, R.150, N.151, R.218, Q.221 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.151, A:R.218, A:Q.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lucas, M. et al., Structural Mechanism for Cargo Recognition by the Retromer Complex. Cell (2016)

Release Date

2016-12-07

Peptides

Vacuolar protein sorting-associated protein 35: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Vacuolar protein sorting-associated protein 35

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