SMTL ID : 5f1r.1

The Transcriptional Regulator PrfA from Listeria Monocytogenes in complex with a ring-fused 2-pyridone (C10)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x 42O: (3~{R})-8-cyclopropyl-7-(naphthalen-1-ylmethyl)-5-oxidanylidene-2,3-dihydro-[1,3]thiazolo[3,2-a]pyridine-3-carboxylic acid(Non-covalent)

42O.1: 19 residues within 4Å: Chain A: I.45, Q.61, Y.62, Y.63, K.64, F.67, K.122, Q.123, Y.126, Q.146, I.149, L.150, V.153, Y.154, L.174, W.224, F.225, A.228, C.229 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.62, A:K.64, A:F.67, A:Y.126, A:Y.126, A:I.149, A:I.149, A:W.224 Hydrogen bonds: A:K.64 Water bridges: A:K.122 Salt bridges: A:K.64 42O.2: 14 residues within 4Å: Chain A: S.127, K.130, F.131, F.134 Chain B: L.60, Q.61, Y.62, Y.126, S.127, K.130, F.131, F.134, S.142, Q.146 12 PLIP interactions: 6 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:K.130, A:F.131, A:F.134, A:F.134 Hydrogen bonds: B:Q.61, B:Y.62, B:Y.126 pi-Stacking: B:F.131, B:F.131, A:F.131, A:F.131, A:F.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Good, J.A. et al., Attenuating Listeria monocytogenes Virulence by Targeting the Regulatory Protein PrfA. Cell Chem Biol (2016)

Release Date

2016-03-16

Peptides

Listeriolysin regulatory protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Listeriolysin regulatory protein

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