SMTL ID : 5f3b.1

Structure of myostatin in complex with chimeric RK35 antibody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

hetero-2-2-2-mer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: Q.39, T.40, P.41, K.43, M.93, L.111 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.40 GOL.2: 9 residues within 4Å: Chain A: Y.148, E.151, P.152, V.153, T.168, F.169, P.170, A.171, L.181 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.151, A:V.153, A:V.153, A:T.168, A:A.171 GOL.3: 11 residues within 4Å: Chain A: F.169, P.170, V.172, S.180, L.181, S.182 Chain B: Q.160, S.162, S.176, S.177, T.178 8 PLIP interactions: 3 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:F.169, A:S.180, A:S.182, B:Q.160, B:S.162, B:T.178 Water bridges: B:S.176, B:S.176 GOL.4: 11 residues within 4Å: Chain C: F.169, P.170, V.172, S.180, L.181, S.182 Chain D: Q.160, S.162, S.176, S.177, T.178 7 PLIP interactions: 3 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:F.169, C:S.180, C:S.182, D:Q.160, D:S.162, D:T.178 Water bridges: D:S.176 GOL.5: 6 residues within 4Å: Chain C: Q.39, T.40, P.41, K.43, M.93, L.111 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Apgar, J.R. et al., Beyond CDR-grafting: Structure-guided humanization of framework and CDR regions of an anti-myostatin antibody. Mabs (2016)

Release Date

2016-09-28

Peptides

RK35 Chimeric antibody heavy chain: AC
RK35 Chimeric antibody light chain: BD
Growth/differentiation factor 8: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
E

B
B

D
F

E
C

F
D

RK35 Chimeric antibody heavy chain

RK35 Chimeric antibody light chain

Growth/differentiation factor 8

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