SMTL ID : 5ji1.1

Crystal Structure of GDF8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

7 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 3 residues within 4Å: Chain A: W.31, M.84, Y.86 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.31, A:Y.86 MPD.2: 3 residues within 4Å: Chain A: P.76, K.78, M.79 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.79 MPD.3: 4 residues within 4Å: Chain A: A.34, P.35, K.36 Ligands: MPD.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.35 Hydrogen bonds: A:K.36 MPD.4: 4 residues within 4Å: Chain A: P.35, Y.38, K.39 Ligands: MPD.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.35, A:Y.38, A:K.39 MPD.5: 3 residues within 4Å: Chain B: A.26, F.27, G.28 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.26 MPD.6: 2 residues within 4Å: Chain B: M.84, Y.86 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Y.86 MPD.7: 3 residues within 4Å: Chain B: Y.18, Y.42, S.44 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.42, B:S.44, B:S.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walker, R.G. et al., Structural basis for potency differences between GDF8 and GDF11. BMC Biol. (2017)

Release Date

2017-03-22

Peptides

Growth/differentiation factor 8: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Growth/differentiation factor 8

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