SMTL ID : 5f4w.1 (1 other biounit)

Tagatose-1,6-bisphosphate aldolase from Streptococcus pyogenes in complex with TBP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

homo-dimer

Ligands

1 x P6T: 1,6-di-O-phosphono-D-tagatose(Covalent)

P6T.1: 24 residues within 4Å: Chain A: A.26, D.28, Q.29, R.30, G.31, A.32, L.69, T.95, G.96, K.126, L.128, E.164, L.166, K.206, L.249, S.250, A.251, G.252, L.276, C.277, G.278, R.279 Ligands: CL.2, 13P.3 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:K.206 Hydrogen bonds: A:D.28, A:Q.29, A:R.30, A:R.30, A:G.31, A:A.32, A:T.95, A:K.126, A:K.206, A:S.250, A:S.250, A:A.251, A:G.278, A:R.279 Water bridges: A:R.30, A:R.35, A:E.93, A:G.96, A:G.96, A:R.279, A:R.279 Salt bridges: A:K.206, A:R.279

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: Q.29, R.30, G.31, A.32, L.33, T.95 Ligands: P6T.1 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain B: Q.29, R.30, G.31, A.32, T.95 Ligand excluded by PLIP

1 x 13P: 1,3-DIHYDROXYACETONEPHOSPHATE(Covalent)

13P.3: 17 residues within 4Å: Chain A: A.26, D.28, Q.29, L.69, K.126, L.128, E.164, K.206, L.249, S.250, A.251, G.252, L.276, C.277, G.278, R.279 Ligands: P6T.1 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:A.26, A:K.206 Hydrogen bonds: A:D.28, A:Q.29, A:K.126, A:K.206, A:S.250, A:S.250, A:S.250, A:S.250, A:A.251, A:G.278, A:R.279 Water bridges: A:R.279, A:R.279, A:R.279 Salt bridges: A:K.206, A:R.279

2 x CA: CALCIUM ION(Non-covalent)

CA.4: 1 residues within 4Å: Chain A: E.141 No protein-ligand interaction detected (PLIP) CA.5: 4 residues within 4Å: Chain A: E.239, A.240, T.242, D.243 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.239, A:E.239, A:T.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

LowKam, C. et al., NON-STEREOSPECIFIC SUBSTRATE CLEAVAGE BY TAGATOSE-BISPHOSPHATE CLASS I ALDOLASE. To Be Published

Release Date

2017-02-01

Peptides

Tagatose 1,6-diphosphate aldolase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tagatose 1,6-diphosphate aldolase 2

Related Entries With Identical Sequence