SMTL ID : 5f8i.1

Enterovirus 71 Polymerase Elongation Complex (C1S2/3 Form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x CTP: CYTIDINE-5'-TRIPHOSPHATE(Non-covalent)

CTP.1: 14 residues within 4Å: Chain A: K.159, R.163, R.174, Y.234, G.236, Y.237, D.238, S.289, T.294, N.298, D.329 Chain B: G.20 Chain C: A.16 Ligands: MG.4 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:K.159, A:K.159, A:R.174, A:G.236, A:Y.237, A:D.238, A:D.238, A:S.289, A:S.289, A:N.298 Water bridges: A:R.163, A:R.174, A:D.329 Salt bridges: A:R.163

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: H.271, H.273, C.282 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.271, A:H.273, A:C.282

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: P.202, C.212, N.213, T.216, F.217, K.220 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.213, A:T.216 Salt bridges: A:K.220

2 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 3 residues within 4Å: Chain A: Y.234, D.329 Ligands: CTP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:Y.234, A:D.329 MG.5: 3 residues within 4Å: Chain A: D.330, T.373, F.374 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.330, H2O.2, H2O.5

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 9 residues within 4Å: Chain A: A.209, G.211, C.212, Y.327, L.375, R.377 Chain B: U.23, C.24 Chain C: G.15 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.209, A:G.211, A:Y.327, A:R.377, A:R.377

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shu, B. et al., Structural basis of viral RNA-dependent RNA polymerase catalysis and translocation. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-06-22

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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