SMTL ID : 5fau.2 (1 other biounit)

wild-type choline TMA lyase in complex with choline

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x CHT: CHOLINE ION(Non-covalent)

CHT.1: 14 residues within 4Å: Chain A: Y.211, D.219, T.337, G.338, F.392, F.398, M.490, G.491, C.492, E.494, T.505, Y.509, L.701, I.703 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.492, A:E.494 Salt bridges: A:D.219, A:E.494 CHT.4: 14 residues within 4Å: Chain B: Y.211, D.219, T.337, G.338, F.392, F.398, M.490, G.491, C.492, E.494, T.505, Y.509, L.701, I.703 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:C.492, B:E.494 Salt bridges: B:D.219, B:E.494

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: H.680, E.683, T.684, R.687, N.755 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.755 Water bridges: A:R.687 GOL.3: 8 residues within 4Å: Chain A: L.520, N.521, H.522, L.539, A.638, N.641, E.642, K.645 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.641, A:K.645 Water bridges: A:N.521, A:E.642 GOL.5: 8 residues within 4Å: Chain B: L.520, N.521, H.522, L.539, A.638, N.641, E.642, K.645 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:H.522, B:N.641, B:E.642, B:K.645 Water bridges: B:N.521, B:E.642 GOL.6: 9 residues within 4Å: Chain B: G.589, S.593, R.595, G.600, G.601, A.602, M.603, Y.604, N.605 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.595, B:G.601, B:M.603, B:N.605 Water bridges: B:N.605

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bodea, S. et al., Molecular Basis of C-N Bond Cleavage by the Glycyl Radical Enzyme Choline Trimethylamine-Lyase. Cell Chem Biol (2016)

Release Date

2016-09-28

Peptides

Choline trimethylamine-lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Choline trimethylamine-lyase

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