SMTL ID : 6nd3.2 (5 other biounits)

wild-type choline TMA lyase in complex with betaine aldehyde

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

homo-dimer

Ligands

2 x BTL: BETAINE ALDEHYDE(Covalent)

BTL.1: 11 residues within 4Å: Chain A: Y.211, D.219, T.337, G.338, F.398, M.490, G.491, C.492, E.494, T.505, Y.509 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.492 Salt bridges: A:D.219, A:E.494 pi-Cation interactions: A:F.398 BTL.2: 13 residues within 4Å: Chain B: Y.211, D.219, T.337, G.338, F.398, M.490, G.491, C.492, E.494, T.505, Y.509, L.701, I.703 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:C.492 Salt bridges: B:D.219, B:E.494 pi-Cation interactions: B:F.398

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orman, M. et al., Structure-Guided Identification of a Small Molecule That Inhibits Anaerobic Choline Metabolism by Human Gut Bacteria. J.Am.Chem.Soc. (2019)

Release Date

2019-01-16

Peptides

Choline trimethylamine-lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Choline trimethylamine-lyase

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