SMTL ID : 5fcu.1

CRYSTAL STRUCTURE OF THE INNER DOMAIN OF CLADE A/E HIV-1 GP120 IN COMPLEX WITH THE ADCC-POTENT RHESUS MACAQUE ANTIBODY JR4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.120 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.120

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain C: E.84, V.109, G.111, Q.112, Y.144, K.170 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:V.109, C:G.111, C:Q.112, C:Y.144 Water bridges: C:K.170, C:Y.176, C:Y.176, C:Y.176 Salt bridges: C:K.170 SO4.3: 3 residues within 4Å: Chain B: S.184 Chain C: T.161, G.162 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:G.162, B:S.184, B:S.184 Water bridges: C:V.163, C:V.163, B:S.184 SO4.4: 2 residues within 4Å: Chain C: S.60, R.62 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.60 Salt bridges: C:R.62

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain C: N.160, T.161 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain C: V.10, S.11 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain C: T.213 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tolbert, W.D. et al., Paring Down HIV Env: Design and Crystal Structure of a Stabilized Inner Domain of HIV-1 gp120 Displaying a Major ADCC Target of the A32 Region. Structure (2016)

Release Date

2016-03-16

Peptides

clade A/E 93TH057 HIV-1 gp120 core: A
JR4 FAB HEAVY CHAIN: B
JR4 FAB LIGHT CHAIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
L

clade A/E 93TH057 HIV-1 gp120 core

JR4 FAB HEAVY CHAIN

JR4 FAB LIGHT CHAIN

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