SMTL ID : 5fdx.1 (1 other biounit)

Structure of DDR1 receptor tyrosine kinase in complex with D2164 inhibitor at 2.65 Angstroms resolution.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x 5X1: 3-[(4-methylpiperazin-1-yl)methyl]-~{N}-[(4~{R})-4-methyl-2-pyrimidin-5-yl-3,4-dihydro-1~{H}-isoquinolin-7-yl]-5-(trifluoromethyl)benzamide(Non-covalent)

5X1.1: 21 residues within 4Å: Chain A: V.48, A.77, V.78, K.79, E.96, I.99, M.100, L.103, I.108, I.109, M.123, T.125, D.126, Y.127, M.128, F.186, H.188, L.197, I.206, A.207, D.208 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:A.77, A:K.79, A:K.79, A:I.109, A:T.125, A:D.208 Hydrogen bonds: A:E.96, A:E.96, A:M.128, A:D.208 Salt bridges: A:E.96, A:E.96, A:D.208, A:D.208 Halogen bonds: A:A.207

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 11 residues within 4Å: Chain A: M.234, A.235, W.236, I.239, W.251, F.269, V.277, N.280, A.281, F.284 Ligands: EDO.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.280 EDO.3: 4 residues within 4Å: Chain A: N.134, S.138, C.264, R.265 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.134, A:S.138, A:S.138, A:R.265 EDO.4: 7 residues within 4Å: Chain A: W.251, F.269, F.284, Y.293, L.294, W.312 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.294 EDO.5: 1 residues within 4Å: Chain A: H.72 No protein-ligand interaction detected (PLIP)

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bartual, S.G. et al., Structure of DDR1 receptor tyrosine kinase in complex with D2164 inhibitor at 2.65 Angstroms resolution. To Be Published

Release Date

2016-10-26

Peptides

Epithelial discoidin domain-containing receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epithelial discoidin domain-containing receptor 1

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