SMTL ID : 5fdx.2 (1 other biounit)

Structure of DDR1 receptor tyrosine kinase in complex with D2164 inhibitor at 2.65 Angstroms resolution.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x 5X1: 3-[(4-methylpiperazin-1-yl)methyl]-~{N}-[(4~{R})-4-methyl-2-pyrimidin-5-yl-3,4-dihydro-1~{H}-isoquinolin-7-yl]-5-(trifluoromethyl)benzamide(Non-covalent)

5X1.1: 18 residues within 4Å: Chain A: V.48, A.77, K.79, E.96, M.100, L.103, I.108, I.109, M.123, T.125, D.126, Y.127, M.128, F.186, H.188, I.206, A.207, D.208 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.48, A:A.77, A:K.79, A:K.79, A:I.109, A:D.208 Hydrogen bonds: A:E.96, A:E.96, A:M.128, A:D.208 Salt bridges: A:E.96, A:E.96, A:D.208, A:D.208

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: F.285, R.286 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.286

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 11 residues within 4Å: Chain A: M.234, I.239, W.251, F.269, V.277, N.280, A.281, F.284, Y.293, L.294, W.312 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.294 PEG.4: 2 residues within 4Å: Chain A: A.227, V.228 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.228, A:V.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bartual, S.G. et al., Structure of DDR1 receptor tyrosine kinase in complex with D2164 inhibitor at 2.65 Angstroms resolution. To Be Published

Release Date

2016-10-26

Peptides

Epithelial discoidin domain-containing receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Epithelial discoidin domain-containing receptor 1

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