SMTL ID : 5fff.1

Noroxomaritidine/Norcraugsodine Reductase in complex with NADP+ and piperonal

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 30 residues within 4Å: Chain A: G.18, T.20, K.21, G.22, I.23, S.42, R.43, N.44, E.47, C.67, D.68, V.69, N.96, A.97, G.98, V.119, I.146, S.147, S.148, Y.161, K.165, P.191, G.192, A.193, I.194, T.196, P.197, G.198, T.199 Ligands: 5XC.2 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:P.191 Hydrogen bonds: A:G.18, A:T.20, A:K.21, A:I.23, A:S.42, A:R.43, A:N.44, A:D.68, A:V.69, A:S.70, A:N.96, A:Y.161, A:K.165, A:I.194, A:I.194, A:T.196, A:T.196, A:G.198 Water bridges: A:K.21, A:G.24, A:S.42, A:S.42, A:N.44, A:S.70, A:N.96, A:G.98, A:G.99 Salt bridges: A:K.21, A:R.43 NAP.3: 31 residues within 4Å: Chain B: G.18, G.19, T.20, K.21, G.22, I.23, S.42, R.43, N.44, E.47, C.67, D.68, V.69, S.70, N.96, A.97, G.98, V.119, I.146, S.147, S.148, Y.161, K.165, P.191, G.192, A.193, I.194, T.196, T.199, S.201, F.202 33 PLIP interactions: 33 interactions with chain B Hydrophobic interactions: B:P.191, B:F.202 Hydrogen bonds: B:G.18, B:T.20, B:K.21, B:I.23, B:S.42, B:R.43, B:N.44, B:E.47, B:D.68, B:D.68, B:V.69, B:S.70, B:N.96, B:G.98, B:K.165, B:I.194, B:I.194, B:S.201 Water bridges: B:S.42, B:S.42, B:N.44, B:S.70, B:S.70, B:N.96, B:N.96, B:G.99, B:E.200, B:F.202, B:F.202 Salt bridges: B:R.43 pi-Cation interactions: B:R.43 NAP.4: 30 residues within 4Å: Chain C: G.18, T.20, K.21, G.22, I.23, S.42, R.43, N.44, E.47, C.67, D.68, V.69, N.96, A.97, G.98, V.119, I.146, S.147, S.148, Y.161, K.165, P.191, G.192, A.193, I.194, T.196, P.197, G.198, T.199 Ligands: 5XC.5 31 PLIP interactions: 31 interactions with chain C Hydrophobic interactions: C:P.191 Hydrogen bonds: C:G.18, C:T.20, C:K.21, C:I.23, C:S.42, C:R.43, C:N.44, C:E.47, C:D.68, C:D.68, C:V.69, C:S.70, C:N.96, C:K.165, C:I.194, C:I.194, C:T.196, C:G.198 Water bridges: C:K.21, C:G.24, C:S.42, C:S.42, C:R.43, C:N.44, C:S.70, C:N.96, C:G.98, C:G.99 Salt bridges: C:K.21, C:R.43 NAP.6: 31 residues within 4Å: Chain D: G.18, G.19, T.20, K.21, G.22, I.23, S.42, R.43, N.44, E.47, C.67, D.68, V.69, S.70, N.96, A.97, G.98, V.119, I.146, S.147, S.148, Y.161, K.165, P.191, G.192, A.193, I.194, T.196, T.199, S.201, F.202 35 PLIP interactions: 35 interactions with chain D Hydrophobic interactions: D:P.191, D:F.202 Hydrogen bonds: D:G.18, D:T.20, D:T.20, D:K.21, D:I.23, D:S.42, D:R.43, D:N.44, D:D.68, D:V.69, D:S.70, D:N.96, D:G.98, D:Y.161, D:K.165, D:I.194, D:I.194, D:T.196, D:T.199, D:S.201 Water bridges: D:S.42, D:S.42, D:N.44, D:S.70, D:S.70, D:N.96, D:N.96, D:G.99, D:E.200, D:F.202, D:F.202 Salt bridges: D:R.43 pi-Cation interactions: D:R.43

2 x 5XC: 1,3-benzodioxole-5-carbaldehyde(Non-covalent)

5XC.2: 9 residues within 4Å: Chain A: Y.100, S.148, I.155, H.158, G.192, A.193, T.199, E.212 Ligands: NAP.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.100 Hydrogen bonds: A:A.193 pi-Stacking: A:H.158, A:H.158 5XC.5: 9 residues within 4Å: Chain C: Y.100, S.148, I.155, H.158, G.192, A.193, T.199, E.212 Ligands: NAP.4 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:Y.100 Hydrogen bonds: C:A.193 Water bridges: C:E.212 pi-Stacking: C:H.158, C:H.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kilgore, M.B. et al., Identification of a Noroxomaritidine Reductase with Amaryllidaceae Alkaloid Biosynthesis Related Activities. J.Biol.Chem. (2016)

Release Date

2016-06-08

Peptides

Noroxomaritidine/Norcraugsodine Reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Noroxomaritidine/Norcraugsodine Reductase

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