- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 5XN: (1S)-1-carboxy-2-(5-{2-[(3-chlorophenyl)methyl]-2H-tetrazol-5-yl}-3-oxo-2,3-dihydro-1,2-oxazol-4-yl)ethan-1-aminium(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 1 residues within 4Å:- Chain A: R.163
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.163
SO4.3: 3 residues within 4Å:- Chain A: L.94, R.149
- Chain B: K.240
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Salt bridges: B:K.240, A:R.149
SO4.4: 1 residues within 4Å:- Chain A: R.148
2 PLIP interactions:2 interactions with chain A- Water bridges: A:R.148
- Salt bridges: A:R.148
SO4.5: 4 residues within 4Å:- Chain A: H.46, K.240, Q.244
- Chain B: K.151
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain A- Salt bridges: B:K.151, A:H.46, A:K.240
- Hydrogen bonds: A:Q.244
SO4.15: 6 residues within 4Å:- Chain B: R.64, A.66, V.95, E.145, R.148, R.149
5 PLIP interactions:5 interactions with chain B- Water bridges: B:K.144, B:K.144
- Salt bridges: B:R.64, B:R.148, B:R.149
SO4.16: 3 residues within 4Å:- Chain B: H.46, K.240, Q.244
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.244
- Salt bridges: B:H.46, B:K.240
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 4 residues within 4Å:- Chain A: K.151, I.152, A.153
- Chain B: K.249
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:K.249, A:A.153
GOL.7: 6 residues within 4Å:- Chain A: K.69, I.70, W.71, V.79, Y.80, V.99
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.69, A:Y.80
GOL.17: 7 residues within 4Å:- Chain B: A.134, P.167, V.169, R.180, S.184, K.187, Y.188
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.180, B:R.180, B:S.184
GOL.18: 10 residues within 4Å:- Chain B: V.56, G.57, D.58, W.71, N.72, G.73, G.76, E.77, Y.80, K.82
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:G.57, B:D.58, B:G.76, B:E.77, B:E.77, B:K.82
- 1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.9: 4 residues within 4Å:- Chain A: I.92, K.218, G.219
- Chain B: L.239
Ligand excluded by PLIPCL.10: 2 residues within 4Å:- Chain A: P.167, S.168
Ligand excluded by PLIPCL.11: 3 residues within 4Å:- Chain A: N.29, K.50, Y.51
Ligand excluded by PLIPCL.19: 2 residues within 4Å:- Chain B: M.107, S.108
Ligand excluded by PLIP- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.12: 10 residues within 4Å:- Chain A: F.146, I.152, F.155, L.215, D.216
- Chain B: N.242, E.243, Q.244, G.245, D.248
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.243, B:G.245, B:D.248
EDO.13: 6 residues within 4Å:- Chain A: S.168, F.170, V.171, R.172, E.176, R.180
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.172, A:R.172, A:R.172
- Water bridges: A:S.168, A:R.180, A:R.180
EDO.20: 7 residues within 4Å:- Chain B: S.168, F.170, V.171, R.172, E.176, R.180
- Ligands: EDO.21
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.172, B:R.172, B:E.176, B:R.180
- Water bridges: B:S.168, B:E.176
EDO.21: 4 residues within 4Å:- Chain B: R.172, T.173, E.176
- Ligands: EDO.20
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.172, B:T.173, B:E.176
EDO.22: 10 residues within 4Å:- Chain A: K.104, P.105, L.239, N.242
- Chain B: T.91, I.92, P.105, S.217, K.218, G.219
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:I.92, B:G.219, A:P.105
EDO.23: 3 residues within 4Å:- Chain B: N.29, K.50, Y.51
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.29, B:Y.51
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, S.Y. et al., Tweaking Subtype Selectivity and Agonist Efficacy at (S)-2-Amino-3-(3-hydroxy-5-methyl-isoxazol-4-yl)propionic acid (AMPA) Receptors in a Small Series of BnTetAMPA Analogues. J.Med.Chem. (2016)
- Release Date
- 2016-03-02
- Peptides
- Glutamate receptor 2,Glutamate receptor 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 5XN: (1S)-1-carboxy-2-(5-{2-[(3-chlorophenyl)methyl]-2H-tetrazol-5-yl}-3-oxo-2,3-dihydro-1,2-oxazol-4-yl)ethan-1-aminium(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, S.Y. et al., Tweaking Subtype Selectivity and Agonist Efficacy at (S)-2-Amino-3-(3-hydroxy-5-methyl-isoxazol-4-yl)propionic acid (AMPA) Receptors in a Small Series of BnTetAMPA Analogues. J.Med.Chem. (2016)
- Release Date
- 2016-03-02
- Peptides
- Glutamate receptor 2,Glutamate receptor 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
C