SMTL ID : 5fhz.1 (1 other biounit)

Human aldehyde dehydrogenase 1A3 complexed with NAD(+) and retinoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 23 residues within 4Å: Chain A: I.194, T.195, P.196, W.197, K.221, P.222, A.223, E.224, G.254, P.255, G.258, A.259, F.272, T.273, G.274, S.275, T.276, V.278, V.282, G.299, Q.378, K.381, E.428 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:T.195, A:T.195, A:K.221, A:E.224, A:S.275, A:S.275, A:T.276, A:G.299, A:Q.378, A:Q.378, A:K.381, A:K.381, A:E.428, A:E.428 NAD.3: 15 residues within 4Å: Chain B: I.194, T.195, P.196, W.197, K.221, A.223, E.224, Q.225, G.254, G.258, A.259, F.272, G.274, S.275, V.278 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.195, B:W.197, B:W.197, B:K.221, B:E.224, B:Q.225, B:S.275 NAD.5: 20 residues within 4Å: Chain C: I.194, T.195, P.196, W.197, K.221, P.222, A.223, E.224, Q.225, G.254, P.255, G.258, A.259, F.272, G.274, S.275, V.278, K.377, Q.378, K.381 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:T.195, C:T.195, C:W.197, C:W.197, C:K.221, C:E.224, C:Q.225, C:S.275, C:K.377 NAD.7: 23 residues within 4Å: Chain D: I.194, T.195, P.196, W.197, K.221, P.222, A.223, E.224, G.254, P.255, G.258, A.259, F.272, G.274, S.275, T.276, E.277, V.278, G.299, Q.378, K.381, E.428, Y.454 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:T.195, D:T.195, D:W.197, D:K.221, D:E.224, D:S.275, D:T.276, D:G.299, D:Q.378, D:Q.378, D:K.381, D:K.381, D:Y.454

4 x REA: RETINOIC ACID(Non-covalent)

REA.2: 13 residues within 4Å: Chain A: I.149, G.153, R.156, T.157, N.198, F.199, L.202, M.203, W.206, C.330, C.331, T.332, L.488 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.149, A:R.156, A:F.199, A:F.199, A:W.206, A:L.488 Hydrogen bonds: A:N.198, A:C.331, A:T.332 REA.4: 12 residues within 4Å: Chain B: I.149, G.153, T.157, L.202, W.206, Q.321, F.325, N.486, L.488, Y.489, A.490, L.506 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:I.149, B:L.202, B:F.325, B:L.488, B:L.506 Hydrogen bonds: B:Q.321 REA.6: 12 residues within 4Å: Chain C: I.149, G.153, T.157, L.202, W.206, Q.321, F.325, N.486, L.488, Y.489, A.490, L.506 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:I.149, C:L.202, C:F.325, C:N.486, C:L.488, C:L.488, C:L.506 REA.8: 16 residues within 4Å: Chain D: I.149, E.152, G.153, R.156, N.198, F.199, M.203, W.206, E.297, C.330, C.331, T.332, N.486, L.488, Y.489, A.490 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:I.149, D:E.152, D:F.199, D:F.199, D:W.206, D:T.332, D:L.488 Hydrogen bonds: D:N.198, D:C.331

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moretti, A. et al., Crystal structure of human aldehyde dehydrogenase 1A3 complexed with NAD(+) and retinoic acid. Sci Rep (2016)

Release Date

2016-11-02

Peptides

Aldehyde dehydrogenase family 1 member A3: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Aldehyde dehydrogenase family 1 member A3

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