- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.88 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GLC- GLC- FRU: beta-D-fructofuranose-(2-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG-BMA-MAN-MAN-MAN.2: 10 residues within 4Å:- Chain A: N.56, K.403, L.647, V.648, W.649, P.652, Y.663
- Chain B: A.200, G.201, Y.207
2 PLIP interactions:2 interactions with chain A- Water bridges: A:K.403, A:K.403
NAG-NAG-BMA-MAN-MAN-MAN.18: 10 residues within 4Å:- Chain A: A.200, G.201, Y.207
- Chain B: N.56, K.403, L.647, V.648, W.649, P.652, Y.663
2 PLIP interactions:2 interactions with chain B- Water bridges: B:K.403, B:K.403
- 2 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.3: 19 residues within 4Å:- Chain A: N.105, S.125, E.126, K.129, W.132
- Chain B: W.132, Q.135, I.136, D.153, Y.185, W.193, I.194, K.195, G.197, Y.198, Q.202
- Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.19, NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.19, NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.19
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:W.132, B:K.195, B:Q.135, A:E.126, A:E.126
- Water bridges: B:S.134, B:S.134, B:Q.135, B:Q.135, B:W.193, B:G.197, B:Y.198, B:Y.198
NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.19: 19 residues within 4Å:- Chain A: W.132, Q.135, I.136, D.153, Y.185, W.193, I.194, K.195, G.197, Y.198, Q.202
- Chain B: N.105, S.125, E.126, K.129, W.132
- Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.3, NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.3, NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.3
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:W.132, A:K.195, A:Q.135, B:E.126, B:E.126
- Water bridges: A:S.134, A:S.134, A:Q.135, A:Q.135, A:W.193, A:G.197, A:Y.198, A:Y.198
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 24 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.5: 3 residues within 4Å:- Chain A: N.50, T.52, L.53
Ligand excluded by PLIPNAG.6: 1 residues within 4Å:- Chain A: N.123
Ligand excluded by PLIPNAG.7: 3 residues within 4Å:- Chain A: N.173, T.212, N.213
Ligand excluded by PLIPNAG.8: 2 residues within 4Å:- Chain A: I.238, N.240
Ligand excluded by PLIPNAG.9: 2 residues within 4Å:- Chain A: N.317, S.319
Ligand excluded by PLIPNAG.10: 7 residues within 4Å:- Chain A: E.211, Y.276, L.277, P.279, R.353, N.355, S.357
Ligand excluded by PLIPNAG.11: 4 residues within 4Å:- Chain A: P.427, F.433, N.442, G.446
Ligand excluded by PLIPNAG.12: 8 residues within 4Å:- Chain A: D.115, T.117, S.118, A.464, A.465, G.468, N.469, V.633
Ligand excluded by PLIPNAG.13: 3 residues within 4Å:- Chain A: M.479, N.481, S.483
Ligand excluded by PLIPNAG.14: 6 residues within 4Å:- Chain A: E.291, D.532, S.535, N.537, L.557, K.559
Ligand excluded by PLIPNAG.15: 2 residues within 4Å:- Chain A: T.543, N.553
Ligand excluded by PLIPNAG.16: 6 residues within 4Å:- Chain A: N.56, A.57, T.58, N.642, S.644, G.646
Ligand excluded by PLIPNAG.21: 3 residues within 4Å:- Chain B: N.50, T.52, L.53
Ligand excluded by PLIPNAG.22: 1 residues within 4Å:- Chain B: N.123
Ligand excluded by PLIPNAG.23: 3 residues within 4Å:- Chain B: N.173, T.212, N.213
Ligand excluded by PLIPNAG.24: 2 residues within 4Å:- Chain B: I.238, N.240
Ligand excluded by PLIPNAG.25: 2 residues within 4Å:- Chain B: N.317, S.319
Ligand excluded by PLIPNAG.26: 7 residues within 4Å:- Chain B: E.211, Y.276, L.277, P.279, R.353, N.355, S.357
Ligand excluded by PLIPNAG.27: 4 residues within 4Å:- Chain B: P.427, F.433, N.442, G.446
Ligand excluded by PLIPNAG.28: 8 residues within 4Å:- Chain B: D.115, T.117, S.118, A.464, A.465, G.468, N.469, V.633
Ligand excluded by PLIPNAG.29: 3 residues within 4Å:- Chain B: M.479, N.481, S.483
Ligand excluded by PLIPNAG.30: 6 residues within 4Å:- Chain B: E.291, D.532, S.535, N.537, L.557, K.559
Ligand excluded by PLIPNAG.31: 2 residues within 4Å:- Chain B: T.543, N.553
Ligand excluded by PLIPNAG.32: 6 residues within 4Å:- Chain B: N.56, A.57, T.58, N.642, S.644, G.646
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramirez-Escudero, M. et al., Structural Analysis of Beta-Fructofuranosidase from Xanthophyllomyces Dendrorhous Reveals Unique Features and the Crucial Role of N-Glycosylation in Oligomerization and Activity. J.Biol.Chem. (2016)
- Release Date
- 2016-02-10
- Peptides
- BETA-FRUCTOFURANOSIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.88 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GLC- GLC- FRU: beta-D-fructofuranose-(2-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 24 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramirez-Escudero, M. et al., Structural Analysis of Beta-Fructofuranosidase from Xanthophyllomyces Dendrorhous Reveals Unique Features and the Crucial Role of N-Glycosylation in Oligomerization and Activity. J.Biol.Chem. (2016)
- Release Date
- 2016-02-10
- Peptides
- BETA-FRUCTOFURANOSIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B