SMTL ID : 5fq5.1

Crystal structure of Cas9-sgRNA-DNA complex solved by native SAD phasing

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 1 residues within 4Å: Chain A: U.24 No protein-ligand interaction detected (PLIP) MG.2: 2 residues within 4Å: Chain A: U.52 Chain B: K.1127 No protein-ligand interaction detected (PLIP)

13 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)

K.3: 4 residues within 4Å: Chain A: U.14, G.15 Chain E: C.5, A.6 No protein-ligand interaction detected (PLIP) K.4: 4 residues within 4Å: Chain A: A.67, U.68, C.69 Chain B: T.1106 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.1106, H2O.10, H2O.11, H2O.11 K.5: 2 residues within 4Å: Chain A: G.23 Chain B: R.407 No protein-ligand interaction detected (PLIP) K.6: 3 residues within 4Å: Chain A: A.70 Chain B: T.1102, Q.1354 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:Q.1354, H2O.11, H2O.11, H2O.35 K.7: 3 residues within 4Å: Chain B: E.588, R.590, N.592 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.588, B:R.590, H2O.26, H2O.26, H2O.43 K.8: 7 residues within 4Å: Chain B: L.627, T.628, F.630, E.631, R.659, Y.660, T.661 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:L.627, B:T.628, B:F.630, B:Y.660, H2O.27 K.9: 6 residues within 4Å: Chain B: G.365, Y.366, G.369, G.370, A.371, K.405 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:Y.366, B:G.369, B:A.371, H2O.5 K.10: 5 residues within 4Å: Chain B: I.230, A.231, L.233, P.234, E.236 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:I.230, B:E.236, H2O.13, H2O.13, H2O.19 K.11: 2 residues within 4Å: Chain B: E.112, K.115 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.112, B:K.115, H2O.16, H2O.16, H2O.16 K.12: 4 residues within 4Å: Chain B: A.644, H.645, F.647, D.648 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:A.644, B:F.647, H2O.27 K.13: 1 residues within 4Å: Chain B: E.61 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.61, H2O.10, H2O.10, H2O.12, H2O.35 K.14: 4 residues within 4Å: Chain A: U.24 Chain B: D.368, G.369, G.370 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:G.369, H2O.5, H2O.5 K.15: 3 residues within 4Å: Chain C: A.8 Chain D: G.3, T.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Olieric, V. et al., Data-Collection Strategy for Challenging Native Sad Phasing. Acta Crystallogr.,Sect.D (2016)

Release Date

2016-03-23

Peptides

CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
B

CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1

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