SMTL ID : 7ox7.1

Target-bound SpCas9 complex with TRAC chimeric RNA-DNA guide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 1 residues within 4Å: Chain A: U.22 No protein-ligand interaction detected (PLIP) MG.2: 2 residues within 4Å: Chain A: U.50, G.62 No protein-ligand interaction detected (PLIP)

14 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)

K.3: 3 residues within 4Å: Chain A: A.65, U.66 Chain B: T.1106 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:T.1106, H2O.1, H2O.2, H2O.3, H2O.9 K.4: 2 residues within 4Å: Chain A: G.21, U.45 No protein-ligand interaction detected (PLIP) K.5: 3 residues within 4Å: Chain A: A.68 Chain B: Q.1354, S.1355 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:Q.1354, H2O.8, H2O.9 K.6: 2 residues within 4Å: Chain A: G.15, G.16 No protein-ligand interaction detected (PLIP) K.7: 2 residues within 4Å: Chain A: U.66 Chain B: R.1175 No protein-ligand interaction detected (PLIP) K.8: 3 residues within 4Å: Chain B: G.40, N.41, T.42 No protein-ligand interaction detected (PLIP) K.9: 1 residues within 4Å: Chain B: E.61 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.61, H2O.10, H2O.12, H2O.13 K.10: 3 residues within 4Å: Chain B: E.588, R.590, N.592 No protein-ligand interaction detected (PLIP) K.11: 4 residues within 4Å: Chain B: L.627, T.628, F.630, Y.660 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:Y.660, H2O.14 K.12: 5 residues within 4Å: Chain B: G.365, Y.366, G.369, A.371, K.405 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:Y.366, B:A.371, H2O.4 K.13: 3 residues within 4Å: Chain B: I.230, L.233, E.236 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:L.233, B:E.236, H2O.12 K.14: 3 residues within 4Å: Chain B: E.112, E.113, K.115 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.112, B:K.115, H2O.13, H2O.13, H2O.14 K.15: 4 residues within 4Å: Chain A: A.1 Chain B: S.1010, V.1013, D.1016 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:V.1013 K.16: 3 residues within 4Å: Chain B: E.385, K.386, D.388 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Donohoue, P.D. et al., Conformational control of Cas9 by CRISPR hybrid RNA-DNA guides mitigates off-target activity in T cells. Mol.Cell (2021)

Release Date

2021-09-15

Peptides

CRISPR-associated endonuclease Cas9/Csn1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
B

CRISPR-associated endonuclease Cas9/Csn1

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