SMTL ID : 5fqd.2 (1 other biounit)

Structural basis of Lenalidomide induced CK1a degradation by the crl4crbn ubiquitin ligase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.307, C.310, C.375, C.378 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.307, B:C.310, B:C.375, B:C.378

1 x LVY: S-Lenalidomide(Non-covalent)

LVY.2: 16 residues within 4Å: Chain B: N.335, P.336, H.337, E.361, H.362, S.363, W.364, W.370, W.384, F.386 Chain C: I.39, N.40, I.41, T.42, N.43, G.44 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:W.370, B:W.370, B:W.384, B:F.386, C:I.39 Hydrogen bonds: B:N.335, B:E.361, B:E.361, B:H.362, B:H.362, B:W.364

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petzold, G. et al., Structural Basis of Lenalidomide-Induced Ck1Alpha Degradation by the Crl4(Crbn) Ubiquitin Ligase. Nature (2016)

Release Date

2016-02-24

Peptides

DNA DAMAGE-BINDING PROTEIN 1: A
PROTEIN CEREBLON: B
CASEIN KINASE I ISOFORM ALPHA: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

DNA DAMAGE-BINDING PROTEIN 1

PROTEIN CEREBLON

CASEIN KINASE I ISOFORM ALPHA

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