SMTL ID : 8g66.1 (1 other biounit)

Structure with SJ3149

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.45 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.307, C.310, C.375, C.378 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.307, B:C.310, B:C.375, B:C.378

1 x YOT: (3S)-3-{5-[(1,2-benzoxazol-3-yl)amino]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}piperidine-2,6-dione(Non-covalent)

YOT.2: 17 residues within 4Å: Chain B: V.334, N.335, P.336, H.337, E.361, H.362, S.363, W.364, W.370, W.384, F.386 Chain C: K.22, I.39, N.40, T.42, N.43, G.44 12 PLIP interactions: 10 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:P.336, B:E.361, B:W.370, B:W.370, B:W.370, B:F.386, C:I.39, C:I.39 Hydrogen bonds: B:N.335, B:E.361, B:W.364, B:W.364

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miller, D.J. et al., Structure of ternary complex with molecular glue targeting CK1A for degradation by the CRL4CRBN ubiquitin ligase. To Be Published

Release Date

2023-12-13

Peptides

DNA damage-binding protein 1: A
Protein cereblon: B
Casein kinase I isoform alpha: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

DNA damage-binding protein 1

Protein cereblon

Casein kinase I isoform alpha

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