SMTL ID : 5fr1.1

Double acetylated RhoGDI-alpha in complex with RhoA-GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain A: D.16, G.17, A.18, C.19, G.20, K.21, T.22, C.23, F.33, V.38, K.121, D.123, L.124, S.163, A.164, K.165 Ligands: MG.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:D.16, A:A.18, A:C.19, A:G.20, A:K.21, A:T.22, A:T.22, A:C.23, A:K.121, A:K.121, A:S.163, A:A.164, A:K.165 Salt bridges: A:K.21, A:D.123 pi-Stacking: A:F.33, A:F.33

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: K.21, T.22, T.40 Ligands: GDP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.22, A:T.40, H2O.1, H2O.1 MG.3: 2 residues within 4Å: Chain A: V.46, D.48 No protein-ligand interaction detected (PLIP) MG.4: 6 residues within 4Å: Chain B: R.126, V.127, R.161, E.163, E.164, Y.165 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:R.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuhlmann, N. et al., Rhogdi Alpha Acetylation at K127 and K141 Affects Binding Towards Non-Prenylated Rhoa. Biochemistry (2016)

Release Date

2016-01-13

Peptides

TRANSFORMING PROTEIN RHOA: A
RHO GDP-DISSOCIATION INHIBITOR 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TRANSFORMING PROTEIN RHOA

RHO GDP-DISSOCIATION INHIBITOR 1

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