SMTL ID : 5fr2.1

Farnesylated RhoA-GDP in complex with RhoGDI-alpha, lysine acetylated at K178

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.35 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FAR: FARNESYL(Covalent)

FAR.1: 12 residues within 4Å: Chain A: C.192 Chain B: L.84, L.86, L.95, E.96, F.111, L.113, Y.119, I.121, Q.139, W.203, L.205 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.95, B:F.111, B:L.113, B:I.121, B:I.121, B:W.203, B:L.205, B:L.205

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 16 residues within 4Å: Chain A: D.15, G.16, A.17, C.18, G.19, K.20, T.21, C.22, F.32, K.120, D.122, L.123, S.162, A.163, K.164 Ligands: MG.3 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:A.17, A:C.18, A:G.19, A:K.20, A:T.21, A:C.22, A:K.120, A:A.163, A:K.164, A:K.164, A:K.164 Water bridges: A:K.20, A:K.20 Salt bridges: A:K.20, A:D.122 pi-Stacking: A:F.32

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: T.21, P.38, T.39 Ligands: GDP.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.21, A:T.39, H2O.1

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.4: 5 residues within 4Å: Chain B: P.77, N.78, V.79, R.129, T.196 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.78, B:V.79, B:V.79, B:R.129, B:T.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuhlmann, N. et al., Structural and Mechanistic Insights Into the Regulation of the Fundamental Rho-Regulator Rhogdi Alpha by Lysine Acetylation. J.Biol.Chem. (2016)

Release Date

2016-01-13

Peptides

TRANSFORMING PROTEIN RHOA: A
RHO GDP-DISSOCIATION INHIBITOR 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TRANSFORMING PROTEIN RHOA

RHO GDP-DISSOCIATION INHIBITOR 1

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