SMTL ID : 5fsn.1

MTH1 substrate recognition: Complex with a aminomethylpyrimidinyl oxypropanol.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x 6Q3: 3-(2-AMINO-6-METHYL-PYRIMIDIN-4-YL)OXYPROPAN-1-OL(Non-covalent)

6Q3.1: 12 residues within 4Å: Chain A: T.8, F.27, G.36, G.37, F.72, F.74, M.81, W.117, D.119, D.120, F.139 Ligands: ACT.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.27, A:F.72, A:F.74, A:W.117, A:F.139 Hydrogen bonds: A:G.36 Water bridges: A:G.36, A:W.117 Salt bridges: A:D.119, A:D.120 pi-Stacking: A:F.72, A:W.117 pi-Cation interactions: A:W.117

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 8 residues within 4Å: Chain A: L.9, L.11, N.33, G.34, D.120, W.123, F.124 Ligands: 6Q3.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.11, A:F.124 Hydrogen bonds: A:G.34

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 3 residues within 4Å: Chain A: Y.148, T.149, L.150 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nissink, J.W.M. et al., Mth1 Substrate Recognition--an Example of Specific Promiscuity. Plos One (2016)

Release Date

2016-07-20

Peptides

7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE

Related Entries With Identical Sequence