SMTL ID : 5fsx.2 (1 other biounit)

Crystal structure of Trypanosoma brucei macrodomain in complex with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 20 residues within 4Å: Chain A: P.109, V.110, A.121, G.131, V.132, D.133, A.135, R.138, C.208, C.209, V.210, S.211, T.212, G.213, V.214, Y.215, F.249, Q.250, E.253 Ligands: GOL.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:V.132, A:C.209, A:S.211, A:G.213, A:V.214, A:Y.215, A:E.253, A:E.253 Water bridges: A:G.130, A:G.131, A:D.133, A:R.138 pi-Stacking: A:F.249

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: A.121, A.122, N.123, G.129, G.130, G.131, D.133, V.214, Y.215 Ligands: ADP.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.122, A:N.123, A:G.130, A:D.133 Water bridges: A:D.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haikarainen, T. et al., Proximal Adp-Ribose Hydrolysis in Trypanosomatids is Catalyzed by a Macrodomain. Sci.Rep. (2016)

Release Date

2016-04-20

Peptides

MACRODOMAIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

MACRODOMAIN

Related Entries With Identical Sequence