SMTL ID : 5fsy.1

Crystal structure of Trypanosoma brucei macrodomain in complex with ADP-ribose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)

AR6.1: 21 residues within 4Å: Chain A: P.109, A.121, A.122, N.123, G.128, G.129, G.130, G.131, V.132, D.133, A.135, C.209, V.210, S.211, T.212, G.213, V.214, Y.215, F.249, Q.250, E.253 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:N.123, A:N.123, A:G.130, A:G.130, A:V.132, A:D.133, A:C.209, A:S.211, A:G.213, A:V.214, A:Y.215, A:Y.215, A:E.253 Water bridges: A:G.130, A:G.130, A:G.131, A:G.131, A:D.133, A:R.138, A:R.138, A:F.249 pi-Stacking: A:F.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haikarainen, T. et al., Proximal Adp-Ribose Hydrolysis in Trypanosomatids is Catalyzed by a Macrodomain. Sci.Rep. (2016)

Release Date

2016-04-20

Peptides

MACRODOMAIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MACRODOMAIN

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