SMTL ID : 5ftt.1

Octameric complex of Latrophilin 3 (Lec, Olf) , Unc5D (Ig, Ig2, TSP1) and FLRT2 (LRR)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-2-2-4-mer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: V.65, F.82, N.84 No protein-ligand interaction detected (PLIP) NAG.2: 2 residues within 4Å: Chain A: N.163, N.195 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.195 NAG.3: 1 residues within 4Å: Chain B: N.170 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.170 NAG.4: 4 residues within 4Å: Chain C: N.71, N.72, E.108, F.112 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:F.112 Hydrogen bonds: C:N.71, C:E.108 NAG.9: 3 residues within 4Å: Chain E: V.65, F.82, N.84 No protein-ligand interaction detected (PLIP) NAG.10: 2 residues within 4Å: Chain E: N.163, N.195 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.195 NAG.11: 1 residues within 4Å: Chain F: N.170 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.170 NAG.12: 5 residues within 4Å: Chain G: N.71, N.72, V.107, E.108, F.112 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:F.112 Hydrogen bonds: G:E.108

4 x NA: SODIUM ION(Non-functional Binders)

NA.5: 6 residues within 4Å: Chain C: T.188, G.189, F.190, D.243, L.244, D.347 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.243 NA.7: 6 residues within 4Å: Chain D: G.189, F.190, V.191, D.243, L.244, D.347 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:L.244, D:D.347 NA.13: 5 residues within 4Å: Chain G: T.188, G.189, F.190, D.243, D.347 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:F.190, G:D.243 NA.15: 6 residues within 4Å: Chain H: T.188, G.189, F.190, V.191, L.244, D.347 2 PLIP interactions: 2 interactions with chain H Hydrogen bonds: H:G.189, H:L.244

4 x CA: CALCIUM ION(Non-covalent)

CA.6: 5 residues within 4Å: Chain C: D.243, N.291, A.292, V.346, D.347 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.243, C:D.243, C:A.292, C:V.346 CA.8: 5 residues within 4Å: Chain D: D.243, N.291, A.292, V.346, D.347 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.243, D:D.243, D:A.292, D:V.346 CA.14: 5 residues within 4Å: Chain G: D.243, N.291, A.292, V.346, D.347 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:D.243, G:A.292, G:V.346 CA.16: 5 residues within 4Å: Chain H: D.243, N.291, A.292, V.346, D.347 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:D.243, H:D.243, H:A.292, H:V.346

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jackson, V.A. et al., Super-Complexes of Adhesion Gpcrs and Neural Guidance Receptors. Nat.Commun. (2016)

Release Date

2016-05-04

Peptides

NETRIN RECEPTOR UNC5D: AE
LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN FLRT2: BF
ADHESION G PROTEIN-COUPLED RECEPTOR L3: CDGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

D
D

G
G

H
H

NETRIN RECEPTOR UNC5D

LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN FLRT2

ADHESION G PROTEIN-COUPLED RECEPTOR L3

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