SMTL ID : 5ftu.1 (2 other biounits)

Tetrameric complex of Latrophilin 3, Unc5D and FLRT2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 6.01 Å

Oligo State

hetero-1-1-2-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 2 residues within 4Å: Chain A: V.65, N.84 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.84 NAG.2: 1 residues within 4Å: Chain B: N.170 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.170 NAG.3: 4 residues within 4Å: Chain C: N.71, N.72, E.108, F.112 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:F.112 Hydrogen bonds: C:N.71, C:N.72, C:N.72, C:E.108

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 7 residues within 4Å: Chain C: T.188, G.189, F.190, D.243, L.244, D.347 Ligands: CA.5 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:F.190, C:L.244, C:D.347 NA.6: 6 residues within 4Å: Chain D: G.189, F.190, V.191, D.243, L.244, D.347 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.243, D:L.244

2 x CA: CALCIUM ION(Non-covalent)

CA.5: 6 residues within 4Å: Chain C: D.243, N.291, A.292, V.346, D.347 Ligands: NA.4 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.243, C:A.292, C:V.346, C:D.347 CA.7: 5 residues within 4Å: Chain D: D.243, N.291, A.292, V.346, D.347 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.243, D:D.243, D:A.292, D:V.346

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jackson, V.A. et al., Super-Complexes of Adhesion Gpcrs and Neural Guidance Receptors. Nat.Commun. (2016)

Release Date

2016-05-04

Peptides

NETRIN RECEPTOR UNC5D: A
LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN FLRT2: B
ADHESION G PROTEIN-COUPLED RECEPTOR L3: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

NETRIN RECEPTOR UNC5D

LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN FLRT2

ADHESION G PROTEIN-COUPLED RECEPTOR L3

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