- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 1 x MN: MANGANESE (II) ION(Non-covalent)
- 1 x 2HG: (2R)-2-hydroxypentanedioic acid(Non-covalent)
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 6 residues within 4Å:- Chain A: I.91, W.92, R.93, F.251, N.255, L.257
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:W.92, A:R.93
- Water bridges: A:R.93, A:N.255
EDO.4: 4 residues within 4Å:- Chain A: V.247, D.250, F.251, A.274
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.250
EDO.5: 5 residues within 4Å:- Chain A: Q.110, F.114, P.232, W.304
- Ligands: EDO.6
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.110
EDO.6: 8 residues within 4Å:- Chain A: S.56, T.57, Q.110, G.231, P.232, N.306
- Ligands: EDO.5, EDO.14
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.57, A:Q.110, A:Q.110
- Water bridges: A:K.58
EDO.7: 5 residues within 4Å:- Chain A: L.174, T.175, R.182, V.183, V.184
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:L.174, A:V.183, A:V.184
EDO.8: 4 residues within 4Å:- Chain A: H.67, D.160, D.163, K.166
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.67
EDO.9: 6 residues within 4Å:- Chain A: K.331, S.334, V.335, C.405, E.406, V.407
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.406
EDO.10: 9 residues within 4Å:- Chain A: G.199, Q.204, Y.206, E.219, S.225, A.309, W.310, N.311
- Ligands: 2HG.2
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.206, A:S.225, A:N.311
EDO.11: 4 residues within 4Å:- Chain A: S.117, L.118, E.121, W.304
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.117
EDO.12: 3 residues within 4Å:- Chain A: N.417, E.418, T.421
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.418, A:E.418, A:T.421, A:T.421
- Water bridges: A:N.417
EDO.13: 4 residues within 4Å:- Chain A: I.404, T.416, H.428, T.436
No protein-ligand interaction detected (PLIP)EDO.14: 7 residues within 4Å:- Chain A: L.52, G.53, S.56, I.230, G.231, P.232
- Ligands: EDO.6
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.52
EDO.15: 7 residues within 4Å:- Chain A: T.32, C.224, N.292, P.314, T.316, C.318, Q.319
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.316, A:Q.319
EDO.16: 4 residues within 4Å:- Chain A: P.232, G.233, G.303, W.304
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:W.304, A:W.304
- Water bridges: A:D.234
- 1 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nowak, R. et al., Crystal Structure of Jmjc Domain of Human Histone Demethylase Uty in Complex with D-2- Hydroxyglutarate. To be Published
- Release Date
- 2016-03-16
- Peptides
- HISTONE DEMETHYLASE UTY: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 1 x MN: MANGANESE (II) ION(Non-covalent)
- 1 x 2HG: (2R)-2-hydroxypentanedioic acid(Non-covalent)
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nowak, R. et al., Crystal Structure of Jmjc Domain of Human Histone Demethylase Uty in Complex with D-2- Hydroxyglutarate. To be Published
- Release Date
- 2016-03-16
- Peptides
- HISTONE DEMETHYLASE UTY: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B