SMTL ID : 5fyx.1

Crystal structure of Drosophila NCS-1 bound to penothiazine FD16

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.73, N.75, D.77, A.79, E.84 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.73, A:D.77, A:A.79, A:E.84, H2O.2 CA.2: 5 residues within 4Å: Chain A: D.156, N.158, D.160, R.162, E.167 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.156, A:D.160, A:R.162, A:E.167, H2O.3 CA.3: 5 residues within 4Å: Chain A: D.109, D.111, D.113, Y.115, E.120 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.109, A:D.113, A:E.120, A:E.120, H2O.3

6 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 7 residues within 4Å: Chain A: W.30, G.33, F.34, D.37, I.51, F.85 Ligands: FD6.10 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.30, A:F.34, A:F.85 Hydrogen bonds: A:D.37, A:D.37, A:D.37 MPD.5: 3 residues within 4Å: Chain A: T.23, E.26, R.94 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.23 Hydrogen bonds: A:Y.21 Water bridges: A:R.94 MPD.6: 6 residues within 4Å: Chain A: D.37, C.38, L.43, G.47, K.50, I.51 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.37, A:L.43 Hydrogen bonds: A:G.47 MPD.7: 4 residues within 4Å: Chain A: D.19, Y.21, I.91, E.99 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.21 Hydrogen bonds: A:T.18, A:E.99 MPD.8: 3 residues within 4Å: Chain A: E.26, Q.29, W.30 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Q.29, A:W.30, A:W.30 Water bridges: A:E.26 MPD.9: 3 residues within 4Å: Chain A: E.24, K.25, R.28 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.25 Hydrogen bonds: A:E.24

1 x FD6: N-[2-(2-chloranylphenothiazin-10-yl)ethyl]-4-methyl-piperazin-1-amine(Non-covalent)

FD6.10: 11 residues within 4Å: Chain A: I.51, Y.52, F.64, F.72, F.85, L.89, T.92, W.103, L.107, L.182 Ligands: MPD.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.51, A:F.72, A:F.85, A:L.89 Water bridges: A:T.92, A:T.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mansilla, A. et al., Interference of the complex between NCS-1 and Ric8a with phenothiazines regulates synaptic function and is an approach for fragile X syndrome. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-01-25

Peptides

FREQUENIN 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FREQUENIN 2

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