SMTL ID : 5g0t.1

InhA in complex with a DNA encoded library hit

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 23 residues within 4Å: Chain A: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196 Ligands: S72.2 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:I.21, A:F.149, A:A.191 Hydrogen bonds: A:G.14, A:S.20, A:I.21, A:D.64, A:D.64, A:V.65, A:I.95, A:G.96, A:K.165, A:I.194, A:I.194, A:T.196 Water bridges: A:G.14, A:A.22, A:F.41, A:I.95, A:L.197, A:L.197, A:L.197 pi-Stacking: A:F.41 NAD.3: 25 residues within 4Å: Chain B: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, Y.158, M.161, K.165, A.191, G.192, P.193, I.194, T.196 Ligands: S72.4 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:I.21, B:F.149, B:A.191 Hydrogen bonds: B:G.14, B:S.20, B:I.21, B:D.64, B:V.65, B:I.95, B:G.96, B:K.165, B:I.194, B:I.194, B:T.196, B:T.196 Water bridges: B:G.14, B:A.22, B:F.41, B:F.41, B:I.95, B:L.197, B:L.197, B:L.197 pi-Stacking: B:F.41 NAD.5: 25 residues within 4Å: Chain C: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, Y.158, M.161, K.165, A.191, G.192, P.193, I.194, T.196 Ligands: S72.6 20 PLIP interactions: 20 interactions with chain C Hydrophobic interactions: C:I.21, C:F.149, C:A.191 Hydrogen bonds: C:G.14, C:I.21, C:D.64, C:D.64, C:V.65, C:I.95, C:G.96, C:Y.158, C:K.165, C:I.194, C:I.194 Water bridges: C:G.14, C:A.22, C:F.41, C:F.41, C:I.95, C:T.196 NAD.7: 24 residues within 4Å: Chain D: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, Y.158, K.165, A.191, G.192, P.193, I.194, T.196 Ligands: S72.8 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:I.21, D:F.149, D:A.191 Hydrogen bonds: D:G.14, D:S.20, D:I.21, D:D.64, D:V.65, D:I.95, D:G.96, D:K.165, D:I.194, D:I.194, D:T.196 Water bridges: D:G.14, D:A.22, D:I.95, D:T.196

4 x S72: 1-benzyl-N-[cis-4-(2-{[(4-fluorophenyl)methyl][2-(methylamino)-2-oxoethyl]amino}-2-oxoethyl)cyclohexyl]-5-methyl-1H-1,2,3-triazole-4-carboxamide(Non-covalent)

S72.2: 11 residues within 4Å: Chain A: G.96, F.97, M.98, M.103, F.149, M.155, Y.158, M.161, L.197, L.218 Ligands: NAD.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.149, A:F.149, A:Y.158, A:Y.158, A:L.218 Hydrogen bonds: A:M.98 Water bridges: A:T.196, A:T.196 S72.4: 11 residues within 4Å: Chain B: G.96, F.97, M.98, F.149, M.155, Y.158, M.161, A.198, I.215, L.218 Ligands: NAD.3 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:F.149, B:F.149, B:Y.158, B:Y.158, B:A.198, B:I.215, B:L.218 Hydrogen bonds: B:M.98 Water bridges: B:Q.100, B:T.196 S72.6: 10 residues within 4Å: Chain C: G.96, F.97, M.98, M.103, F.149, Y.158, M.161, I.215, L.218 Ligands: NAD.5 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:F.149, C:F.149, C:Y.158, C:Y.158, C:Y.158, C:I.215, C:L.218 Hydrogen bonds: C:M.98, C:Y.158 S72.8: 9 residues within 4Å: Chain D: G.96, F.97, M.98, M.103, F.149, Y.158, M.161, L.218 Ligands: NAD.7 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:F.149, D:F.149, D:Y.158, D:Y.158, D:L.218 Hydrogen bonds: D:M.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Soutter, H.H. et al., Discovery of Cofactor-Specific, Bactericidal Mycobacterium Tuberculosis Inha Inhibitors Using DNA-Encoded Library Technology. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-11-30

Peptides

ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]

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