SMTL ID : 5g0u.1

InhA in complex with a DNA encoded library hit

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 24 residues within 4Å: Chain A: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196, M.199 Ligands: 9CV.2 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:I.21, A:F.149, A:F.149, A:A.191 Hydrogen bonds: A:G.14, A:S.20, A:I.21, A:D.64, A:D.64, A:V.65, A:I.95, A:G.96, A:K.165, A:I.194, A:I.194, A:T.196 Water bridges: A:A.22, A:F.41, A:I.95, A:L.197 pi-Stacking: A:F.41 NAD.3: 23 residues within 4Å: Chain B: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196, M.199 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:I.21, B:F.149, B:A.191 Hydrogen bonds: B:G.14, B:S.20, B:I.21, B:D.64, B:V.65, B:I.95, B:G.96, B:K.165, B:I.194, B:I.194, B:T.196, B:T.196 Water bridges: B:A.22, B:F.41, B:F.41, B:I.95, B:L.197 pi-Stacking: B:F.41 NAD.4: 22 residues within 4Å: Chain C: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:I.21, C:F.149, C:A.191 Hydrogen bonds: C:G.14, C:I.21, C:D.64, C:D.64, C:V.65, C:I.95, C:G.96, C:K.165, C:I.194, C:I.194 Water bridges: C:G.14, C:A.22, C:I.95, C:Y.158, C:T.196 NAD.5: 24 residues within 4Å: Chain D: G.14, I.15, I.16, S.20, I.21, F.41, L.63, D.64, V.65, S.94, I.95, G.96, I.122, M.147, D.148, F.149, K.165, A.191, G.192, P.193, I.194, T.196, M.199 Ligands: 9CV.6 22 PLIP interactions: 22 interactions with chain D Hydrophobic interactions: D:F.149, D:F.149, D:A.191 Hydrogen bonds: D:G.14, D:S.20, D:I.21, D:D.64, D:V.65, D:I.95, D:G.96, D:K.165, D:I.194, D:I.194, D:T.196 Water bridges: D:A.22, D:F.41, D:F.41, D:F.41, D:I.95, D:T.196, D:L.197 pi-Stacking: D:F.41

2 x 9CV: 5-[(4-fluoranyl-3-phenoxy-phenyl)methylamino]-~{N}-methyl-6-[(1-pyridin-2-ylpiperidin-4-yl)amino]pyridine-3-carboxamide(Non-covalent)

9CV.2: 14 residues within 4Å: Chain A: G.96, F.97, M.98, Q.100, M.103, G.104, A.157, Y.158, M.161, A.198, M.199, A.201, I.202 Ligands: NAD.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.157, A:Y.158, A:A.198, A:I.202, A:I.202 Hydrogen bonds: A:M.98, A:M.98, A:M.98 pi-Stacking: A:F.97, A:Y.158 9CV.6: 14 residues within 4Å: Chain D: G.96, F.97, M.98, Q.100, M.103, G.104, A.157, Y.158, M.161, A.198, M.199, A.201, I.202 Ligands: NAD.5 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:Q.100, D:Y.158, D:A.198, D:I.202, D:I.202 Hydrogen bonds: D:M.98, D:M.98 pi-Stacking: D:F.97, D:Y.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Soutter, H.H. et al., Discovery of Cofactor-Specific, Bactericidal Mycobacterium Tuberculosis Inha Inhibitors Using DNA-Encoded Library Technology. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-11-30

Peptides

ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]

Related Entries With Identical Sequence